Understanding how compounds affect the disease biology of patients, and which potential side effects could be expected, is one of the core challenges in drug discovery. Transcriptomics (RNA-seq) allows us to measure these compound effects via an unbiased readout of gene expression changes. While „conventional“ analysis of RNA-seq data yields insights into individual compound effects and similarities, deeper connections between principles of compound structure and transcriptome effect elude us. Insights into this connection would help us support project teams with data-driven decision making on compounds. In this pilot, we are bringing together a cross-functional team of colleagues from LST, CMD, SyMOL and DS&AI to tackle this challenge and build a toolkit to enable understanding of how compound structure relates to complex gene expression patterns and to explore common themes amongst structures or shared off-target/general perturbation effects. This toolbox will become the starting point for other efforts aimed at leveraging multi-omics data in understanding compound mechanism of actions. Artwork created using Stable Diffusion.
The Applied Machine Learning Group (AML) strives for the application of a data-driven approach to drug research and development by developing and utilizing best-in-class machine learning (ML) models to optimize R&D processes. The implementation of ML algorithms accelerates drug discovery and a platform to monitor and self-train models enables portfolio view of our capabilities, allowing us to become more focused. We envision to work in a fast-paced setting, we expect to fail quickly and adapt swiftly, all while expanding your ML capabilities. We also believe in making the right choices not only for our immediate team but decisions to build solutions catered to broader R&D. The success at AML will be measured by bucketing the benefit of the developed capability into one or more of these three buckets, (1) Savings in time (2) Savings in cost (3) Generation of new insights
Scientific work in Pharma R&D requires a reliable high-quality body of data and knowledge. Bayer Pharma R&D has an extremely large amount of scientific data. The use of a Data Catalog significantly improves the findability of data and serves as a key pillar in the implementation of a comprehensive data strategy.
The Proprietary Information Management team, PIM, takes care of processes and systems related to either Compliance or Data Governance. Please talk to us if you need help with some cross-functional or collaboration-related topic or if you are interested to learn more about compound-related processes, compliance checks, lab notebook systems and similar things. For more information contact: Friederike Stoll.
